PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK01070.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 79aa    MW: 9173.27 Da    PI: 10.5049
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK01070.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.91.2e-3347854127
        NAM  54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                +ekewyfFs +d+ky+tg r+nrat++gyWk+tgkdke+l++ +g lvg+kktLvfykgrap+gek++Wvmheyr
  PK01070.2   4 GEKEWYFFSLKDQKYPTGLRTNRATEAGYWKTTGKDKEILRSgSGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYR 78 
                689*************************************9967788***************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.791179IPR003441NAC domain
SuperFamilySSF1019411.83E-33378IPR003441NAC domain
PfamPF023651.3E-16878IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
ASMGEKEWYF FSLKDQKYPT GLRTNRATEA GYWKTTGKDK EILRSGSGVL VGMKKTLVFY  60
KGRAPRGEKS NWVMHEYRX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B2e-2817866141NAC domain-containing protein 19
4dul_A2e-2817866141NAC domain-containing protein 19
1ut7_B2e-2817866141NO APICAL MERISTEM PROTEIN
1ut7_A2e-2817866141NO APICAL MERISTEM PROTEIN
1ut4_B2e-2817866141NO APICAL MERISTEM PROTEIN
1ut4_A2e-2817866141NO APICAL MERISTEM PROTEIN
3swp_D2e-2817869144NAC domain-containing protein 19
3swp_C2e-2817869144NAC domain-containing protein 19
3swp_B2e-2817869144NAC domain-containing protein 19
3swp_A2e-2817869144NAC domain-containing protein 19
3swm_D2e-2817869144NAC domain-containing protein 19
3swm_C2e-2817869144NAC domain-containing protein 19
3swm_B2e-2817869144NAC domain-containing protein 19
3swm_A2e-2817869144NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006353806.22e-46PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
RefseqXP_015882962.12e-46PREDICTED: NAC domain-containing protein 92
SwissprotO040172e-43NAC98_ARATH; Protein CUP-SHAPED COTYLEDON 2
TrEMBLA0A125SLF72e-46A0A125SLF7_SOLTU; NAC103
STRINGPGSC0003DMT4000137537e-46(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2174434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18400.13e-47NAC domain containing protein 58